Ever since upgrading to El Capitan all external hard disks won't eject because Spotlight is always running. I have to stop Spotlight with this command before ejecting or risk corrupting the hard disk:
sudo launchctl unload -w /System/Library/LaunchDaemons/com.apple.metadata.mds.plist
And then restart Spotlight:
sudo launchctl load -w /System/Library/LaunchDaemons/com.apple.metadata.mds.plist
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